IL_8FZD_102

3D structure

PDB id

8FZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZD_102 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.0931

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8FZD|1|A|C|2652
8FZD|1|A|U|2653
8FZD|1|A|A|2654
8FZD|1|A|G|2655
8FZD|1|A|U|2656
8FZD|1|A|A|2657
8FZD|1|A|C|2658
*
8FZD|1|A|G|2663
8FZD|1|A|G|2664
8FZD|1|A|A|2665
8FZD|1|A|C|2666
8FZD|1|A|C|2667
8FZD|1|A|G|2668

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6