IL_8FZD_128

3D structure

PDB id

8FZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8FZD|1|a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZD_128 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1144

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8FZD|1|a|G|147
8FZD|1|a|G|148
8FZD|1|a|A|149
8FZD|1|a|U|150
8FZD|1|a|A|151
8FZD|1|a|A|152
8FZD|1|a|C|153
*
8FZD|1|a|G|168
8FZD|1|a|C|169
8FZD|1|a|U|170
8FZD|1|a|A|171
8FZD|1|a|A|172
8FZD|1|a|U|173
8FZD|1|a|A|174
8FZD|1|a|C|175

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20