IL_8FZD_141
3D structure
- PDB id
- 8FZD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 8FZD|1|a|A|532, 8FZD|1|a|U|534, 8FZD|1|a|A|535
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FZD_141 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.1329
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.4
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8FZD|1|a|G|515
8FZD|1|a|PSU|516
8FZD|1|a|G|517
8FZD|1|a|C|518
8FZD|1|a|C|519
8FZD|1|a|A|520
8FZD|1|a|G|521
*
8FZD|1|a|C|528
8FZD|1|a|G|529
8FZD|1|a|G|530
8FZD|1|a|U|531
8FZD|1|a|A|532
8FZD|1|a|A|533
8FZD|1|a|U|534
8FZD|1|a|A|535
8FZD|1|a|C|536
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain d
- 30S ribosomal protein S4
- Chain l
- 30S ribosomal protein S12
- Chain w
- Peptide chain release factor 1
- Chain z
- F-UAA mRNA
Coloring options: