IL_8FZD_186

3D structure

PDB id

8FZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZD_186 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1198

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8FZD|1|A|U|1851
8FZD|1|A|U|1852
8FZD|1|A|A|1853
8FZD|1|A|A|1854
8FZD|1|A|U|1855
8FZD|1|A|U|1856
8FZD|1|A|G|1857
8FZD|1|A|A|1858
8FZD|1|A|U|1859
8FZD|1|A|G|1860
*
8FZD|1|A|U|1882
8FZD|1|A|U|1883
8FZD|1|A|G|1884
8FZD|1|A|A|1885
8FZD|1|A|U|1886
8FZD|1|A|C|1887
8FZD|1|A|G|1888
8FZD|1|A|A|1889
8FZD|1|A|A|1890
8FZD|1|A|G|1891

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain y

Transfer RNA; tRNA