IL_8FZE_087

3D structure

PDB id

8FZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAGG*CCGACCUUGAAAUAC

Length

20 nucleotides

Bulged bases

8FZE|1|A|C|2164, 8FZE|1|A|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZE_087 not in the Motif Atlas

Homologous match to IL_5J7L_329

Geometric discrepancy: 0.4604

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

8FZE|1|A|G|2124
8FZE|1|A|G|2125
8FZE|1|A|A|2126
8FZE|1|A|G|2127
8FZE|1|A|G|2128
*
8FZE|1|A|C|2160
8FZE|1|A|C|2161
8FZE|1|A|G|2162
8FZE|1|A|A|2163
8FZE|1|A|C|2164
8FZE|1|A|C|2165
8FZE|1|A|U|2166
8FZE|1|A|U|2167
8FZE|1|A|G|2168
8FZE|1|A|A|2169
8FZE|1|A|A|2170
8FZE|1|A|A|2171
8FZE|1|A|U|2172
8FZE|1|A|A|2173
8FZE|1|A|C|2174

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain y

Transfer RNA; tRNA