IL_8FZE_142

3D structure

PDB id

8FZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZE_142 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.1058

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

8FZE|1|a|G|450
8FZE|1|a|A|451
8FZE|1|a|A|452
8FZE|1|a|G|453
8FZE|1|a|G|454
8FZE|1|a|G|455
*
8FZE|1|a|C|477
8FZE|1|a|A|478
8FZE|1|a|U|479
8FZE|1|a|U|480
8FZE|1|a|G|481
8FZE|1|a|A|482
8FZE|1|a|C|483

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16