IL_8FZE_187

3D structure

PDB id

8FZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZE_187 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0998

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8FZE|1|A|U|1851
8FZE|1|A|U|1852
8FZE|1|A|A|1853
8FZE|1|A|A|1854
8FZE|1|A|U|1855
8FZE|1|A|U|1856
8FZE|1|A|G|1857
8FZE|1|A|A|1858
8FZE|1|A|U|1859
8FZE|1|A|G|1860
*
8FZE|1|A|U|1882
8FZE|1|A|U|1883
8FZE|1|A|G|1884
8FZE|1|A|A|1885
8FZE|1|A|U|1886
8FZE|1|A|C|1887
8FZE|1|A|G|1888
8FZE|1|A|A|1889
8FZE|1|A|A|1890
8FZE|1|A|G|1891

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain y

Transfer RNA; tRNA