IL_8FZE_189

3D structure

PDB id

8FZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGCCUU*AAUGUU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZE_189 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.3197

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

8FZE|1|A|A|2101
8FZE|1|A|G|2102
8FZE|1|A|C|2103
8FZE|1|A|C|2104
8FZE|1|A|U|2105
8FZE|1|A|U|2106
*
8FZE|1|A|A|2183
8FZE|1|A|A|2184
8FZE|1|A|U|2185
8FZE|1|A|G|2186
8FZE|1|A|U|2187
8FZE|1|A|U|2188

Current chains

Chain A

23S Ribosomal RNA

Nearby chains