IL_8FZF_016

3D structure

PDB id

8FZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8FZF|1|A|G|801, 8FZF|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZF_016 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.1154

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8FZF|1|A|G|674
8FZF|1|A|A|675
8FZF|1|A|A|676
8FZF|1|A|A|677
8FZF|1|A|C|678
*
8FZF|1|A|G|799
8FZF|1|A|A|800
8FZF|1|A|G|801
8FZF|1|A|A|802
8FZF|1|A|U|803
8FZF|1|A|A|804
8FZF|1|A|G|805
8FZF|1|A|C|806

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain N

50S ribosomal protein L15