IL_8FZF_016
3D structure
- PDB id
- 8FZF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8FZF|1|A|G|801, 8FZF|1|A|G|805
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FZF_016 not in the Motif Atlas
- Homologous match to IL_5J7L_260
- Geometric discrepancy: 0.1154
- The information below is about IL_5J7L_260
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_54041.2
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8FZF|1|A|G|674
8FZF|1|A|A|675
8FZF|1|A|A|676
8FZF|1|A|A|677
8FZF|1|A|C|678
*
8FZF|1|A|G|799
8FZF|1|A|A|800
8FZF|1|A|G|801
8FZF|1|A|A|802
8FZF|1|A|U|803
8FZF|1|A|A|804
8FZF|1|A|G|805
8FZF|1|A|C|806
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L4
- Chain N
- 50S ribosomal protein L15
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