3D structure

PDB id
8FZF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGG*CAAUC
Length
8 nucleotides
Bulged bases
8FZF|1|A|G|776, 8FZF|1|A|A|788, 8FZF|1|A|A|789
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FZF_021 not in the Motif Atlas
Homologous match to IL_5J7L_265
Geometric discrepancy: 0.0748
The information below is about IL_5J7L_265
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_06549.2
Basepair signature
cWW-cWW
Number of instances in this motif group
6

Unit IDs

8FZF|1|A|G|775
8FZF|1|A|G|776
8FZF|1|A|G|777
*
8FZF|1|A|C|787
8FZF|1|A|A|788
8FZF|1|A|A|789
8FZF|1|A|U|790
8FZF|1|A|C|791

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain 6
50S ribosomal protein L34
Chain C
50S ribosomal protein L2
Chain U
50S ribosomal protein L22

Coloring options:


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