3D structure

PDB id
8FZF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUAAG*CGAAG
Length
10 nucleotides
Bulged bases
8FZF|1|A|A|1156
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FZF_034 not in the Motif Atlas
Homologous match to IL_4WF9_036
Geometric discrepancy: 0.1131
The information below is about IL_4WF9_036
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_38507.2
Basepair signature
cWW-tWH-L-tHS-cWW
Number of instances in this motif group
16

Unit IDs

8FZF|1|A|C|998
8FZF|1|A|U|999
8FZF|1|A|A|1000
8FZF|1|A|A|1001
8FZF|1|A|G|1002
*
8FZF|1|A|C|1153
8FZF|1|A|G|1154
8FZF|1|A|A|1155
8FZF|1|A|A|1156
8FZF|1|A|G|1157

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain 2
Large ribosomal subunit protein uL30
Chain B
5S ribosomal RNA; 5S rRNA
Chain S
50S ribosomal protein L20
Chain T
Ribosomal protein L21

Coloring options:


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