IL_8FZF_038
3D structure
- PDB id
- 8FZF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGGAAAC*GGAAGAUGUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 8FZF|1|A|A|1127, 8FZF|1|A|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FZF_038 not in the Motif Atlas
- Geometric match to IL_4WF9_040
- Geometric discrepancy: 0.1014
- The information below is about IL_4WF9_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
8FZF|1|A|G|1024
8FZF|1|A|G|1025
8FZF|1|A|G|1026
8FZF|1|A|A|1027
8FZF|1|A|A|1028
8FZF|1|A|A|1029
8FZF|1|A|C|1030
*
8FZF|1|A|G|1124
8FZF|1|A|G|1125
8FZF|1|A|A|1126
8FZF|1|A|A|1127
8FZF|1|A|G|1128
8FZF|1|A|A|1129
8FZF|1|A|U|1130
8FZF|1|A|G|1131
8FZF|1|A|U|1132
8FZF|1|A|A|1133
8FZF|1|A|A|1134
8FZF|1|A|C|1135
8FZF|1|A|G|1136
8FZF|1|A|G|1137
8FZF|1|A|G|1138
8FZF|1|A|G|1139
8FZF|1|A|C|1140
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 8
- 50S ribosomal protein L36
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain D
- 50S ribosomal protein L3
- Chain L
- 50S ribosomal protein L13
- Chain O
- 50S ribosomal protein L16
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