3D structure

PDB id
8FZF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UGCAAAC*GGACGUAUA
Length
16 nucleotides
Bulged bases
8FZF|1|A|A|1801, 8FZF|1|A|C|1816, 8FZF|1|A|U|1820
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FZF_071 not in the Motif Atlas
Homologous match to IL_7A0S_065
Geometric discrepancy: 0.1014
The information below is about IL_7A0S_065
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_17069.5
Basepair signature
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
Number of instances in this motif group
5

Unit IDs

8FZF|1|A|U|1798
8FZF|1|A|G|1799
8FZF|1|A|C|1800
8FZF|1|A|A|1801
8FZF|1|A|A|1802
8FZF|1|A|A|1803
8FZF|1|A|C|1804
*
8FZF|1|A|G|1813
8FZF|1|A|G|1814
8FZF|1|A|A|1815
8FZF|1|A|C|1816
8FZF|1|A|G|1817
8FZF|1|A|U|1818
8FZF|1|A|A|1819
8FZF|1|A|U|1820
8FZF|1|A|A|1821

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L2
Chain a
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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