3D structure

PDB id
8FZF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
AUA*UGUUU
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FZF_100 not in the Motif Atlas
Homologous match to IL_7A0S_086
Geometric discrepancy: 0.1864
The information below is about IL_7A0S_086
Detailed Annotation
Major groove minor groove platform with extra cWW
Broad Annotation
Major groove minor groove platform with extra cWW
Motif group
IL_51387.2
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
20

Unit IDs

8FZF|1|A|A|2459
8FZF|1|A|U|2460
8FZF|1|A|A|2461
*
8FZF|1|A|U|2489
8FZF|1|A|G|2490
8FZF|1|A|U|2491
8FZF|1|A|U|2492
8FZF|1|A|U|2493

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain O
50S ribosomal protein L16

Coloring options:


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