IL_8FZF_193

3D structure

PDB id

8FZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUC*GAAU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZF_193 not in the Motif Atlas

Geometric match to IL_4P3T_002

Geometric discrepancy: 0.2177

The information below is about IL_4P3T_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01472.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

8FZF|1|A|A|849
8FZF|1|A|U|850
8FZF|1|A|C|851
*
8FZF|1|A|G|926
8FZF|1|A|A|927
8FZF|1|A|A|928
8FZF|1|A|U|929

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein uL30