IL_8FZF_195

3D structure

PDB id

8FZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZF_195 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1174

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8FZF|1|A|U|1851
8FZF|1|A|U|1852
8FZF|1|A|A|1853
8FZF|1|A|A|1854
8FZF|1|A|U|1855
8FZF|1|A|U|1856
8FZF|1|A|G|1857
8FZF|1|A|A|1858
8FZF|1|A|U|1859
8FZF|1|A|G|1860
*
8FZF|1|A|U|1882
8FZF|1|A|U|1883
8FZF|1|A|G|1884
8FZF|1|A|A|1885
8FZF|1|A|U|1886
8FZF|1|A|C|1887
8FZF|1|A|G|1888
8FZF|1|A|A|1889
8FZF|1|A|A|1890
8FZF|1|A|G|1891

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain x

Transfer RNA; tRNA