IL_8FZG_017

3D structure

PDB id

8FZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe (Composite state II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8FZG|1|A|G|801, 8FZG|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZG_017 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.0916

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8FZG|1|A|G|674
8FZG|1|A|A|675
8FZG|1|A|A|676
8FZG|1|A|A|677
8FZG|1|A|C|678
*
8FZG|1|A|G|799
8FZG|1|A|A|800
8FZG|1|A|G|801
8FZG|1|A|A|802
8FZG|1|A|U|803
8FZG|1|A|A|804
8FZG|1|A|G|805
8FZG|1|A|C|806

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain N

50S ribosomal protein L15