IL_8FZG_095

3D structure

PDB id

8FZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe (Composite state II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZG_095 not in the Motif Atlas

Homologous match to IL_7A0S_086

Geometric discrepancy: 0.1659

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

8FZG|1|A|A|2459
8FZG|1|A|U|2460
8FZG|1|A|A|2461
*
8FZG|1|A|U|2489
8FZG|1|A|G|2490
8FZG|1|A|U|2491
8FZG|1|A|U|2492
8FZG|1|A|U|2493

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L16

Chain w

Peptide chain release factor 1