IL_8FZG_104

3D structure

PDB id

8FZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe (Composite state II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZG_104 not in the Motif Atlas

Geometric match to IL_7A0S_094

Geometric discrepancy: 0.095

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.5

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8FZG|1|A|C|2652
8FZG|1|A|U|2653
8FZG|1|A|A|2654
8FZG|1|A|G|2655
8FZG|1|A|U|2656
8FZG|1|A|A|2657
8FZG|1|A|C|2658
*
8FZG|1|A|G|2663
8FZG|1|A|G|2664
8FZG|1|A|A|2665
8FZG|1|A|C|2666
8FZG|1|A|C|2667
8FZG|1|A|G|2668

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain v

Peptide chain release factor RF3