IL_8FZG_131

3D structure

PDB id

8FZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe (Composite state II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8FZG|1|a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZG_131 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1165

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8FZG|1|a|G|147
8FZG|1|a|G|148
8FZG|1|a|A|149
8FZG|1|a|U|150
8FZG|1|a|A|151
8FZG|1|a|A|152
8FZG|1|a|C|153
*
8FZG|1|a|G|168
8FZG|1|a|C|169
8FZG|1|a|U|170
8FZG|1|a|A|171
8FZG|1|a|A|172
8FZG|1|a|U|173
8FZG|1|a|A|174
8FZG|1|a|C|175

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20