IL_8FZG_179

3D structure

PDB id

8FZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe (Composite state II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

G(4OC)CC*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZG_179 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.134

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8FZG|1|a|G|1401
8FZG|1|a|4OC|1402
8FZG|1|a|C|1403
8FZG|1|a|C|1404
*
8FZG|1|a|G|1497
8FZG|1|a|UR3|1498
8FZG|1|a|A|1499
8FZG|1|a|A|1500
8FZG|1|a|C|1501

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain w

Peptide chain release factor 1

Chain x

Transfer RNA; tRNA

Chain z

F-UAA mRNA