IL_8FZH_006

3D structure

PDB id

8FZH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZH_006 not in the Motif Atlas

Geometric match to IL_7A0S_006

Geometric discrepancy: 0.0799

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

8FZH|1|A|G|188
8FZH|1|A|G|189
8FZH|1|A|A|190
8FZH|1|A|A|191
8FZH|1|A|C|192
8FZH|1|A|U|193
8FZH|1|A|G|194
*
8FZH|1|A|C|201
8FZH|1|A|U|202
8FZH|1|A|A|203
8FZH|1|A|A|204
8FZH|1|A|G|205
8FZH|1|A|U|206
8FZH|1|A|A|207
8FZH|1|A|C|208

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain N

50S ribosomal protein L15

Chain Z

50S ribosomal protein L28