IL_8FZH_083

3D structure

PDB id

8FZH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUGUGUAGGAUAG*CCUU

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZH_083 not in the Motif Atlas

Geometric match to IL_4EYA_003

Geometric discrepancy: 0.354

The information below is about IL_4EYA_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8FZH|1|A|A|2108
8FZH|1|A|U|2109
8FZH|1|A|G|2110
8FZH|1|A|U|2111
8FZH|1|A|G|2112
8FZH|1|A|U|2113
8FZH|1|A|A|2114
8FZH|1|A|G|2115
8FZH|1|A|G|2116
8FZH|1|A|A|2117
8FZH|1|A|U|2118
8FZH|1|A|A|2119
8FZH|1|A|G|2120
*
8FZH|1|A|C|2178
8FZH|1|A|C|2179
8FZH|1|A|U|2180
8FZH|1|A|U|2181

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain y

Transfer RNA; tRNA