IL_8FZH_085
3D structure
- PDB id
- 8FZH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State II-D)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAGG*CCGACCUUGAAAUAC
- Length
- 20 nucleotides
- Bulged bases
- 8FZH|1|A|U|2172
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FZH_085 not in the Motif Atlas
- Homologous match to IL_5J7L_329
- Geometric discrepancy: 0.5025
- The information below is about IL_5J7L_329
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_87290.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L
- Number of instances in this motif group
- 1
Unit IDs
8FZH|1|A|G|2124
8FZH|1|A|G|2125
8FZH|1|A|A|2126
8FZH|1|A|G|2127
8FZH|1|A|G|2128
*
8FZH|1|A|C|2160
8FZH|1|A|C|2161
8FZH|1|A|G|2162
8FZH|1|A|A|2163
8FZH|1|A|C|2164
8FZH|1|A|C|2165
8FZH|1|A|U|2166
8FZH|1|A|U|2167
8FZH|1|A|G|2168
8FZH|1|A|A|2169
8FZH|1|A|A|2170
8FZH|1|A|A|2171
8FZH|1|A|U|2172
8FZH|1|A|A|2173
8FZH|1|A|C|2174
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain y
- Transfer RNA; tRNA
Coloring options: