IL_8FZH_174

3D structure

PDB id

8FZH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8FZH|1|a|C|1400, 8FZH|1|a|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZH_174 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.1298

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8FZH|1|a|C|1399
8FZH|1|a|C|1400
8FZH|1|a|G|1401
*
8FZH|1|a|C|1501
8FZH|1|a|A|1502
8FZH|1|a|A|1503
8FZH|1|a|G|1504

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain w

Peptide chain release factor 1

Chain x

Transfer RNA; tRNA

Chain z

F-UAA mRNA