IL_8FZI_007

3D structure

PDB id

8FZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZI_007 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0869

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8FZI|1|A|C|239
8FZI|1|A|C|240
8FZI|1|A|A|241
8FZI|1|A|G|242
8FZI|1|A|U|243
8FZI|1|A|A|244
8FZI|1|A|G|245
*
8FZI|1|A|C|253
8FZI|1|A|G|254
8FZI|1|A|A|255
8FZI|1|A|A|256
8FZI|1|A|C|257
8FZI|1|A|G|258

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain N

50S ribosomal protein L15