IL_8FZI_044

3D structure

PDB id

8FZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8FZI|1|A|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZI_044 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.091

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8FZI|1|A|C|1208
8FZI|1|A|U|1209
8FZI|1|A|G|1210
8FZI|1|A|C|1211
8FZI|1|A|G|1212
8FZI|1|A|A|1213
8FZI|1|A|A|1214
8FZI|1|A|G|1215
*
8FZI|1|A|U|1234
8FZI|1|A|G|1235
8FZI|1|A|G|1236
8FZI|1|A|A|1237
8FZI|1|A|G|1238

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L20