IL_8FZI_133

3D structure

PDB id

8FZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8FZI|1|a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZI_133 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1017

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8FZI|1|a|G|147
8FZI|1|a|G|148
8FZI|1|a|A|149
8FZI|1|a|U|150
8FZI|1|a|A|151
8FZI|1|a|A|152
8FZI|1|a|C|153
*
8FZI|1|a|G|168
8FZI|1|a|C|169
8FZI|1|a|U|170
8FZI|1|a|A|171
8FZI|1|a|A|172
8FZI|1|a|U|173
8FZI|1|a|A|174
8FZI|1|a|C|175

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20