IL_8FZI_170
3D structure
- PDB id
- 8FZI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCUGCAU*AUG(2MG)C
- Length
- 12 nucleotides
- Bulged bases
- 8FZI|1|a|C|1054
- QA status
- Modified nucleotides: 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FZI_170 not in the Motif Atlas
- Geometric match to IL_4V88_422
- Geometric discrepancy: 0.3861
- The information below is about IL_4V88_422
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
8FZI|1|a|G|1050
8FZI|1|a|C|1051
8FZI|1|a|U|1052
8FZI|1|a|G|1053
8FZI|1|a|C|1054
8FZI|1|a|A|1055
8FZI|1|a|U|1056
*
8FZI|1|a|A|1204
8FZI|1|a|U|1205
8FZI|1|a|G|1206
8FZI|1|a|2MG|1207
8FZI|1|a|C|1208
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain j
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S14
- Chain z
- F-UAA mRNA
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