IL_8FZI_192

3D structure

PDB id

8FZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZI_192 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1008

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8FZI|1|A|U|1851
8FZI|1|A|U|1852
8FZI|1|A|A|1853
8FZI|1|A|A|1854
8FZI|1|A|U|1855
8FZI|1|A|U|1856
8FZI|1|A|G|1857
8FZI|1|A|A|1858
8FZI|1|A|U|1859
8FZI|1|A|G|1860
*
8FZI|1|A|U|1882
8FZI|1|A|U|1883
8FZI|1|A|G|1884
8FZI|1|A|A|1885
8FZI|1|A|U|1886
8FZI|1|A|C|1887
8FZI|1|A|G|1888
8FZI|1|A|A|1889
8FZI|1|A|A|1890
8FZI|1|A|G|1891

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain x

Transfer RNA; tRNA