IL_8FZI_197

3D structure

PDB id

8FZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAGG*CCGACCUUGAAAUAC

Length

20 nucleotides

Bulged bases

8FZI|1|A|G|2125, 8FZI|1|A|A|2126, 8FZI|1|A|A|2171, 8FZI|1|A|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZI_197 not in the Motif Atlas

Homologous match to IL_5J7L_329

Geometric discrepancy: 0.581

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

8FZI|1|A|G|2124
8FZI|1|A|G|2125
8FZI|1|A|A|2126
8FZI|1|A|G|2127
8FZI|1|A|G|2128
*
8FZI|1|A|C|2160
8FZI|1|A|C|2161
8FZI|1|A|G|2162
8FZI|1|A|A|2163
8FZI|1|A|C|2164
8FZI|1|A|C|2165
8FZI|1|A|U|2166
8FZI|1|A|U|2167
8FZI|1|A|G|2168
8FZI|1|A|A|2169
8FZI|1|A|A|2170
8FZI|1|A|A|2171
8FZI|1|A|U|2172
8FZI|1|A|A|2173
8FZI|1|A|C|2174

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain x

Transfer RNA; tRNA