IL_8FZJ_055

3D structure

PDB id

8FZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

8FZJ|1|A|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZJ_055 not in the Motif Atlas

Homologous match to IL_5J7L_299

Geometric discrepancy: 0.1105

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8FZJ|1|A|U|1468
8FZJ|1|A|A|1469
8FZJ|1|A|A|1470
8FZJ|1|A|G|1471
*
8FZJ|1|A|U|1520
8FZJ|1|A|G|1521
8FZJ|1|A|A|1522
8FZJ|1|A|U|1523
8FZJ|1|A|G|1524

Current chains

Chain A

23S Ribosomal RNA

Nearby chains