IL_8FZJ_087

3D structure

PDB id

8FZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAGG*CCGACCUUGAAAUAC

Length

20 nucleotides

Bulged bases

8FZJ|1|A|C|2165, 8FZJ|1|A|U|2166, 8FZJ|1|A|A|2171, 8FZJ|1|A|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZJ_087 not in the Motif Atlas

Homologous match to IL_5J7L_329

Geometric discrepancy: 0.529

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

8FZJ|1|A|G|2124
8FZJ|1|A|G|2125
8FZJ|1|A|A|2126
8FZJ|1|A|G|2127
8FZJ|1|A|G|2128
*
8FZJ|1|A|C|2160
8FZJ|1|A|C|2161
8FZJ|1|A|G|2162
8FZJ|1|A|A|2163
8FZJ|1|A|C|2164
8FZJ|1|A|C|2165
8FZJ|1|A|U|2166
8FZJ|1|A|U|2167
8FZJ|1|A|G|2168
8FZJ|1|A|A|2169
8FZJ|1|A|A|2170
8FZJ|1|A|A|2171
8FZJ|1|A|U|2172
8FZJ|1|A|A|2173
8FZJ|1|A|C|2174

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain x

Transfer RNA; tRNA