IL_8FZJ_157
3D structure
- PDB id
- 8FZJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGAGUACG*UAAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FZJ_157 not in the Motif Atlas
- Homologous match to IL_5J7L_038
- Geometric discrepancy: 0.0889
- The information below is about IL_5J7L_038
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.4
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
8FZJ|1|a|G|887
8FZJ|1|a|G|888
8FZJ|1|a|A|889
8FZJ|1|a|G|890
8FZJ|1|a|U|891
8FZJ|1|a|A|892
8FZJ|1|a|C|893
8FZJ|1|a|G|894
*
8FZJ|1|a|U|905
8FZJ|1|a|A|906
8FZJ|1|a|A|907
8FZJ|1|a|A|908
8FZJ|1|a|A|909
8FZJ|1|a|C|910
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain l
- 30S ribosomal protein S12
Coloring options: