IL_8FZJ_177

3D structure

PDB id

8FZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZJ_177 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1845

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8FZJ|1|a|C|1303
8FZJ|1|a|G|1304
8FZJ|1|a|G|1305
8FZJ|1|a|A|1306
8FZJ|1|a|U|1307
8FZJ|1|a|U|1308
*
8FZJ|1|a|A|1329
8FZJ|1|a|U|1330
8FZJ|1|a|G|1331
8FZJ|1|a|A|1332
8FZJ|1|a|A|1333
8FZJ|1|a|G|1334

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S13