IL_8FZJ_178

3D structure

PDB id

8FZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8FZJ|1|a|C|1400, 8FZJ|1|a|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZJ_178 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.1269

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8FZJ|1|a|C|1399
8FZJ|1|a|C|1400
8FZJ|1|a|G|1401
*
8FZJ|1|a|C|1501
8FZJ|1|a|A|1502
8FZJ|1|a|A|1503
8FZJ|1|a|G|1504

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain x

Transfer RNA; tRNA

Chain z

F-UAA mRNA