IL_8G29_075
3D structure
- PDB id
- 8G29 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- CGAAA(5MU)UC(5MC)UUG*C(5MC)UG
- Length
- 16 nucleotides
- Bulged bases
- 8G29|1|1A|A|1938, 8G29|1|1A|U|1944, 8G29|1|1A|U|1963
- QA status
- Modified nucleotides: 5MU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8G29_075 not in the Motif Atlas
- Geometric match to IL_4WF9_077
- Geometric discrepancy: 0.1151
- The information below is about IL_4WF9_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.1
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-tSW-L
- Number of instances in this motif group
- 8
Unit IDs
8G29|1|1A|C|1934
8G29|1|1A|G|1935
8G29|1|1A|A|1936
8G29|1|1A|A|1937
8G29|1|1A|A|1938
8G29|1|1A|5MU|1939
8G29|1|1A|U|1940
8G29|1|1A|C|1941
8G29|1|1A|5MC|1942
8G29|1|1A|U|1943
8G29|1|1A|U|1944
8G29|1|1A|G|1945
*
8G29|1|1A|C|1961
8G29|1|1A|5MC|1962
8G29|1|1A|U|1963
8G29|1|1A|G|1964
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1D
- 50S ribosomal protein L2
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1w
- Transfer RNA; tRNA
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