IL_8G29_223

3D structure

PDB id

8G29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

UG*CACAA

Length

7 nucleotides

Bulged bases

8G29|1|2A|C|1584

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G29_223 not in the Motif Atlas

Homologous match to IL_7RQB_054

Geometric discrepancy: 0.1243

The information below is about IL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_67474.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8G29|1|2A|U|1415
8G29|1|2A|G|1416
*
8G29|1|2A|C|1582
8G29|1|2A|A|1583
8G29|1|2A|C|1584
8G29|1|2A|A|1586
8G29|1|2A|A|1587

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains