IL_8G29_224

3D structure

PDB id

8G29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

8G29|1|2A|U|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G29_224 not in the Motif Atlas

Homologous match to IL_7RQB_055

Geometric discrepancy: 0.0676

The information below is about IL_7RQB_055

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

8G29|1|2A|C|1417
8G29|1|2A|G|1418
8G29|1|2A|A|1419
8G29|1|2A|U|1420
8G29|1|2A|G|1421
*
8G29|1|2A|C|1577
8G29|1|2A|U|1578
8G29|1|2A|A|1579
8G29|1|2A|A|1580
8G29|1|2A|G|1581

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains