IL_8G29_353
3D structure
- PDB id
- 8G29 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- GGACAAC*GCUAAUCC
- Length
- 15 nucleotides
- Bulged bases
- 8G29|1|1a|U|173
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8G29_353 not in the Motif Atlas
- Homologous match to IL_5J7L_012
- Geometric discrepancy: 0.2283
- The information below is about IL_5J7L_012
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.6
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-tHW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8G29|1|1a|G|147
8G29|1|1a|G|148
8G29|1|1a|A|149
8G29|1|1a|C|150
8G29|1|1a|A|151
8G29|1|1a|A|152
8G29|1|1a|C|153
*
8G29|1|1a|G|168
8G29|1|1a|C|169
8G29|1|1a|U|170
8G29|1|1a|A|171
8G29|1|1a|A|172
8G29|1|1a|U|173
8G29|1|1a|C|174
8G29|1|1a|C|175
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1t
- 30S ribosomal protein S20
Coloring options: