IL_8G2B_010

3D structure

PDB id

8G2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGAAU*AUAG

Length

9 nucleotides

Bulged bases

8G2B|1|1A|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G2B_010 not in the Motif Atlas

Homologous match to IL_7RQB_011

Geometric discrepancy: 0.0679

The information below is about IL_7RQB_011

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8G2B|1|1A|C|280
8G2B|1|1A|G|281
8G2B|1|1A|A|282
8G2B|1|1A|A|283
8G2B|1|1A|U|284
*
8G2B|1|1A|A|357
8G2B|1|1A|U|358
8G2B|1|1A|A|359
8G2B|1|1A|G|360

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains