IL_8G2B_039

3D structure

PDB id

8G2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGUAAAG*CGAAAAUGAUCGGGGC

Length

23 nucleotides

Bulged bases

8G2B|1|1A|U|1026, 8G2B|1|1A|A|1127, 8G2B|1|1A|U|1130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G2B_039 not in the Motif Atlas

Geometric match to IL_7RQB_040

Geometric discrepancy: 0.0321

The information below is about IL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.1

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

8G2B|1|1A|G|1024
8G2B|1|1A|G|1025
8G2B|1|1A|U|1026
8G2B|1|1A|A|1027
8G2B|1|1A|A|1028
8G2B|1|1A|A|1029
8G2B|1|1A|G|1030
*
8G2B|1|1A|C|1124
8G2B|1|1A|G|1125
8G2B|1|1A|A|1126
8G2B|1|1A|A|1127
8G2B|1|1A|A|1128
8G2B|1|1A|A|1129
8G2B|1|1A|U|1130
8G2B|1|1A|G|1131
8G2B|1|1A|A|1132
8G2B|1|1A|U|1133
8G2B|1|1A|C|1135
8G2B|1|1A|G|1136
8G2B|1|1A|G|1137
8G2B|1|1A|G|1138
8G2B|1|1A|G|1139
8G2B|1|1A|C|1140

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1B

5S ribosomal RNA; 5S rRNA

Chain 1E

50S ribosomal protein L3

Chain 1N

50S ribosomal protein L13

Chain 1Q

50S ribosomal protein L16