IL_8G2B_056

3D structure

PDB id

8G2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUAG*CGAAG

Length

9 nucleotides

Bulged bases

8G2B|1|1A|A|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G2B_056 not in the Motif Atlas

Homologous match to IL_7RQB_057

Geometric discrepancy: 0.0507

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8G2B|1|1A|C|1437
8G2B|1|1A|U|1438
8G2B|1|1A|A|1439
8G2B|1|1A|G|1440
*
8G2B|1|1A|C|1551
8G2B|1|1A|G|1552
8G2B|1|1A|A|1553
8G2B|1|1A|A|1554
8G2B|1|1A|G|1555

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains