IL_8G2B_062

3D structure

PDB id

8G2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

8G2B|1|1A|C|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G2B_062 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.0617

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8G2B|1|1A|G|1526
8G2B|1|1A|G|1527
8G2B|1|1A|A|1528
8G2B|1|1A|A|1528|||A
8G2B|1|1A|G|1529
*
8G2B|1|1A|U|1540
8G2B|1|1A|G|1541
8G2B|1|1A|A|1542
8G2B|1|1A|C|1543
8G2B|1|1A|A|1544
8G2B|1|1A|A|1545
8G2B|1|1A|C|1546

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains