IL_8G2B_073
3D structure
- PDB id
- 8G2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- UCAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8G2B_073 not in the Motif Atlas
- Homologous match to IL_7RQB_074
- Geometric discrepancy: 0.0777
- The information below is about IL_7RQB_074
- Detailed Annotation
- UAA/GAN with extra pair
- Broad Annotation
- No text annotation
- Motif group
- IL_90318.1
- Basepair signature
- cWW-tSH-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
8G2B|1|1A|U|1851
8G2B|1|1A|C|1852
8G2B|1|1A|A|1853
8G2B|1|1A|A|1854
8G2B|1|1A|G|1855
*
8G2B|1|1A|C|1887
8G2B|1|1A|G|1888
8G2B|1|1A|A|1889
8G2B|1|1A|A|1890
8G2B|1|1A|G|1891
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L28
- Chain 1y
- Transfer RNA; tRNA
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