IL_8G2B_123
3D structure
- PDB id
- 8G2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- GACAAC*GCUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 8G2B|1|1a|U|173
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8G2B_123 not in the Motif Atlas
- Homologous match to IL_4LFB_009
- Geometric discrepancy: 0.1198
- The information below is about IL_4LFB_009
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_12745.1
- Basepair signature
- cWW-tWH-tWH-tHW-tHW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8G2B|1|1a|G|148
8G2B|1|1a|A|149
8G2B|1|1a|C|150
8G2B|1|1a|A|151
8G2B|1|1a|A|152
8G2B|1|1a|C|153
*
8G2B|1|1a|G|168
8G2B|1|1a|C|169
8G2B|1|1a|U|170
8G2B|1|1a|A|171
8G2B|1|1a|A|172
8G2B|1|1a|U|173
8G2B|1|1a|C|174
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1t
- 30S ribosomal protein S20
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