IL_8G2B_167

3D structure

PDB id

8G2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G2B_167 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.0768

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8G2B|1|1a|C|1303
8G2B|1|1a|G|1304
8G2B|1|1a|G|1305
8G2B|1|1a|A|1306
8G2B|1|1a|U|1307
8G2B|1|1a|U|1308
*
8G2B|1|1a|A|1329
8G2B|1|1a|U|1330
8G2B|1|1a|G|1331
8G2B|1|1a|A|1332
8G2B|1|1a|A|1333
8G2B|1|1a|G|1334

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1m

30S ribosomal protein S13

Chain 1u

30S ribosomal protein Thx