IL_8G2B_233

3D structure

PDB id

8G2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

UG*CAACAAG

Length

9 nucleotides

Bulged bases

8G2B|1|2A|C|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G2B_233 not in the Motif Atlas

Homologous match to IL_7RQB_061

Geometric discrepancy: 0.3853

The information below is about IL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52493.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

8G2B|1|2A|U|1481
8G2B|1|2A|G|1482
*
8G2B|1|2A|C|1506
8G2B|1|2A|A|1507
8G2B|1|2A|A|1508
8G2B|1|2A|C|1509
8G2B|1|2A|A|1509|||A
8G2B|1|2A|A|1509|||B
8G2B|1|2A|G|1510

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains