IL_8G2B_259

3D structure

PDB id

8G2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G2B_259 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.3583

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

8G2B|1|2A|G|2124
8G2B|1|2A|G|2125
8G2B|1|2A|A|2126
8G2B|1|2A|G|2127
*
8G2B|1|2A|C|2161
8G2B|1|2A|G|2162
8G2B|1|2A|C|2163
8G2B|1|2A|C|2164
8G2B|1|2A|G|2165
8G2B|1|2A|G|2166
8G2B|1|2A|U|2167
8G2B|1|2A|G|2168
8G2B|1|2A|A|2169
8G2B|1|2A|A|2170
8G2B|1|2A|A|2171
8G2B|1|2A|U|2172
8G2B|1|2A|A|2173
8G2B|1|2A|C|2174

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2y

Transfer RNA; tRNA