3D structure

PDB id
8G2B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
CAG*CGGAG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G2B_261 not in the Motif Atlas
Homologous match to IL_7RQB_088
Geometric discrepancy: 0.3274
The information below is about IL_7RQB_088
Detailed Annotation
Isolated tHS basepair with bulges
Broad Annotation
No text annotation
Motif group
IL_38958.7
Basepair signature
cWW-tHS-cWW
Number of instances in this motif group
15

Unit IDs

8G2B|1|2A|C|2297
8G2B|1|2A|A|2298
8G2B|1|2A|G|2299
*
8G2B|1|2A|C|2317
8G2B|1|2A|G|2318
8G2B|1|2A|G|2319
8G2B|1|2A|A|2320
8G2B|1|2A|G|2321

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2B
5S ribosomal RNA; 5S rRNA
Chain 2G
50S ribosomal protein L5
Chain 2S
50S ribosomal protein L18

Coloring options:


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